Software Packages, Tools, and Scripts
SEEDS: Stochastic Ecological and Evolutionary Dynamics System
SEEDS is an open-source computational platform for studying the ecological- and evolutionary dynamics of digital populations and communities. SEEDS is a plugin-based system that is designed to be easily used and extended. More information, source code, examples, and documentation are available at the SEEDS development site.
PlateTools is an open-source Python package for reading, manipulating, and analyzing microplate data. More information, source code, scripts, and documentation are available at the PlateTools development site.