1. Connelly, B. D., K. J. Dickinson, S. P. Hammarlund, and B. Kerr. 2016. Negative niche construction favors the evolution of cooperation. Evolutionary Ecology 30:267–283.
  2. Hammarlund, S. P., B. D. Connelly, K. J. Dickinson, and B. Kerr. 2016. The Evolution of Cooperation by the Hankshaw Effect. Evolution 70:1376–1385.
  3. Connelly, B. D. 2012. Ecological Effects on the Evolution of Cooperative Behaviors. Michigan State University.
  4. Connelly, B. D., L. Zaman, and P. K. McKinley. 2012. The SEEDS Platform for Evolutionary and Ecological Simulations. Pp. 133–140 in Proceedings of the Genetic and Evolutionary Computation Conference.
  5. Beckmann, B. E., D. B. Knoester, B. D. Connelly, C. M. Waters, and P. K. McKinley. 2012. Evolution of resistance to quorum quenching in digital organisms. Artificial Life 1–20.
  6. Connelly, B. D., L. Zaman, P. K. McKinley, and C. Ofria. 2011. Modeling the Evolutionary Dynamics of Plasmids in Spatial Populations. Pp. 227–233 in Proceedings of the Genetic and Evolutionary Computation Conference.
  7. Connelly, B. D., L. Zaman, C. Ofria, and P. K. McKinley. 2010. Social Structure and the Maintenance of Biodiversity. Pp. 461–468 in Proceedings of the 12th International Conference on the Synthesis and Simulation of Living Systems (ALIFE).
  8. Connelly, B. D., B. E. Beckmann, and P. K. McKinley. 2010. Resource Abundance Promotes the Evolution of Public Goods Cooperation. Pp. 143–150 in Proceedings of the Genetic and Evolutionary Computation Conference.
  9. Connelly, B. D., and P. K. McKinley. 2009. Evolving Social Behavior in Adverse Environments. Pp. 498–498 in Proceedings of 10th European Conference on Articial Life.
  10. Connelly, B. D., P. K. McKinley, and B. E. Beckmann. 2009. Evolving Cooperative Pheromone Usage in Digital Organisms. Pp. 184–191 in Proceedings of IEEE Symposium on Artificial Life.
  11. Tanizaki, S., J. W. Clifford, B. D. Connelly, and M. Feig. 2008. Conformational sampling of peptides in cellular environments. Biophysical Journal 94:747–759.
  12. Feig, M., S. Tanizaki, J. Chocholousova, M. Sayadi, J. W. Clifford, B. D. Connelly, S. Mukherjee, and S. M. Law. 2008. Simulating Biomolecules in Cellular Environments. Pp. 23–39 in Proceedings of the NIC Workshop, From Computational Biophysics to Systems Biology (CBSB08).
  13. Connelly, B. D., C. W. Bowron, L. Xiao, P.-N. Tan, and C. Wang. 2006. Adaptively Routing P2P Queries Using Association Analysis. Pp. 281–288 in Proceedings of the 2006 International Conference on Parallel Processing.
  14. Connelly, B. D. 2005. A distributed approach to managing large simulation data sets. Michigan State University.

Preprints

  1. Connelly, B. D., K. J. Dickinson, S. P. Hammarlund, and B. Kerr. 2015. Negative Niche Construction Favors the Evolution of Cooperation. bioRxiv, doi: 10.1101/018994. Cold Spring Harbor Labs Journals.
  2. Hammarlund, S. P., B. D. Connelly, K. J. Dickinson, and B. Kerr. 2015. The Evolution of Cooperation by the Hankshaw Effect. bioRxiv, doi: 10.1101/016667. Cold Spring Harbor Labs Journals.